HL_9I89_065

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9I89|1|A|G|2778, 9I89|1|A|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I89_065 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.244

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

9I89|1|A|C|2772
9I89|1|A|U|2773
9I89|1|A|G|2774
9I89|1|A|A|2775
9I89|1|A|A|2776
9I89|1|A|A|2777
9I89|1|A|G|2778
9I89|1|A|C|2779
9I89|1|A|A|2780
9I89|1|A|U|2781
9I89|1|A|C|2782
9I89|1|A|U|2783
9I89|1|A|A|2784
9I89|1|A|A|2785
9I89|1|A|G|2786

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

Large ribosomal subunit protein bL36

Chain K

Large ribosomal subunit protein uL6