HL_9I89_073

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I89_073 not in the Motif Atlas

Homologous match to HL_9MTS_102

Geometric discrepancy: 0.0947

The information below is about HL_9MTS_102

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

44

Unit IDs

9I89|1|D|G|32
9I89|1|D|C|33
9I89|1|D|U|34
9I89|1|D|C|35
9I89|1|D|A|36
9I89|1|D|U|37
9I89|1|D|A|38
9I89|1|D|A|39
9I89|1|D|C|40

Current chains

Chain D

fMet-P-tRNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain j

Small ribosomal subunit protein uS9