HL_9I89_088
3D structure
- PDB id
- 9I89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I89_088 not in the Motif Atlas
- Homologous match to HL_6CZR_086
- Geometric discrepancy: 0.1222
- The information below is about HL_6CZR_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9I89|1|a|C|697
9I89|1|a|G|698
9I89|1|a|G|699
9I89|1|a|U|700
9I89|1|a|G|701
9I89|1|a|A|702
9I89|1|a|A|703
9I89|1|a|A|704
9I89|1|a|U|705
9I89|1|a|G|706
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain h
- Small ribosomal subunit protein uS7
- Chain l
- Small ribosomal subunit protein uS11
Coloring options: