HL_9IOA_001

3D structure

PDB id

9IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the tetrameric DRT9-ncRNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UCAUA

Length

5 nucleotides

Bulged bases

9IOA|1|B|C|8, 9IOA|1|B|U|10

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOA_001 not in the Motif Atlas

Geometric match to HL_7QR8_002

Geometric discrepancy: 0.1321

The information below is about HL_7QR8_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9IOA|1|B|U|7
9IOA|1|B|C|8
9IOA|1|B|A|9
9IOA|1|B|U|10
9IOA|1|B|A|11

Current chains

Chain B

RNA (177-MER)

Nearby chains

Chain A

RNA-dependent DNA polymerase