HL_9IOB_008

3D structure

PDB id

9IOB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the hexameric DRT9-ncRNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

AUUCGU

Length

6 nucleotides

Bulged bases

9IOB|1|D|U|66, 9IOB|1|D|C|67

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOB_008 not in the Motif Atlas

Geometric match to HL_1YLS_001

Geometric discrepancy: 0.2855

The information below is about HL_1YLS_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9IOB|1|D|A|64
9IOB|1|D|U|65
9IOB|1|D|U|66
9IOB|1|D|C|67
9IOB|1|D|G|68
9IOB|1|D|U|69

Current chains

Chain D

RNA (177-MER)

Nearby chains

Chain A

RNA-dependent DNA polymerase

Chain J

RNA (177-MER)

Chain K

RNA-dependent DNA polymerase