9IOB Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9IOB_001 | 1/B/7:11 | Mini UNCG | geometric HL_7QR8_002 NA | |
| HL_9IOB_004 | 1/B/90:97 | GNRA wlth tandem sheared | geometric HL_3HHN_010 HL_68642.1 | |
| HL_9IOB_006 | 1/D/7:11 | Mini UNCG | geometric HL_7QR8_002 NA | |
| HL_9IOB_009 | 1/D/90:97 | GNRA wlth tandem sheared | geometric HL_3HHN_010 HL_68642.1 | |
| HL_9IOB_011 | 1/F/7:11 | Mini UNCG | geometric HL_7QR8_002 NA | |
| HL_9IOB_014 | 1/F/90:97 | GNRA wlth tandem sheared | geometric HL_3HHN_010 HL_68642.1 | |
| HL_9IOB_016 | 1/H/7:11 | Mini UNCG | geometric HL_7QR8_002 NA | |
| HL_9IOB_019 | 1/H/90:97 | GNRA wlth tandem sheared | geometric HL_3HHN_010 HL_68642.1 | |
| HL_9IOB_021 | 1/J/7:11 | Mini UNCG | geometric HL_7QR8_002 NA | |
| HL_9IOB_024 | 1/J/90:97 | GNRA wlth tandem sheared | geometric HL_3HHN_010 HL_68642.1 | |
| HL_9IOB_026 | 1/L/7:11 | Mini UNCG | geometric HL_7QR8_002 NA | |
| HL_9IOB_029 | 1/L/90:97 | GNRA wlth tandem sheared | geometric HL_3HHN_010 HL_68642.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9IOB_002 | No text annotation | ||
| HL_9IOB_003 | UNCG | ||
| HL_9IOB_005 | No text annotation | ||
| HL_9IOB_007 | No text annotation | ||
| HL_9IOB_008 | UNCG | ||
| HL_9IOB_010 | No text annotation | ||
| HL_9IOB_012 | No text annotation | ||
| HL_9IOB_013 | UNCG | ||
| HL_9IOB_015 | No text annotation | ||
| HL_9IOB_017 | No text annotation | ||
| HL_9IOB_018 | UNCG | ||
| HL_9IOB_020 | No text annotation | ||
| HL_9IOB_022 | No text annotation | ||
| HL_9IOB_023 | UNCG | ||
| HL_9IOB_025 | No text annotation | ||
| HL_9IOB_027 | No text annotation | ||
| HL_9IOB_028 | UNCG | ||
| HL_9IOB_030 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9IOB_001 | 1/B/20:25, 1/B/135:140 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_9IOB_002 | 1/D/20:25, 1/D/135:140 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_9IOB_003 | 1/F/20:25, 1/F/135:140 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_9IOB_004 | 1/H/20:25, 1/H/135:140 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_9IOB_005 | 1/J/20:25, 1/J/135:140 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_9IOB_006 | 1/L/20:25, 1/L/135:140 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_9IOB_001 | 1/B/29:33, 1/B/52:55, 1/B/78:83, 1/B/104:131 | No text annotation | ||
| J4_9IOB_002 | 1/D/29:33, 1/D/52:55, 1/D/78:83, 1/D/104:131 | No text annotation | ||
| J4_9IOB_003 | 1/F/29:33, 1/F/52:55, 1/F/78:83, 1/F/104:131 | No text annotation | ||
| J4_9IOB_004 | 1/H/29:33, 1/H/52:55, 1/H/78:83, 1/H/104:131 | No text annotation | ||
| J4_9IOB_005 | 1/J/29:33, 1/J/52:55, 1/J/78:83, 1/J/104:131 | No text annotation | ||
| J4_9IOB_006 | 1/L/29:33, 1/L/52:55, 1/L/78:83, 1/L/104:131 | No text annotation |
Problematic loops
No problematic loops
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