HL_9IOT_004

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

9IOT|1|A|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_004 not in the Motif Atlas

Geometric match to HL_6QN3_003

Geometric discrepancy: 0.1035

The information below is about HL_6QN3_003

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9IOT|1|A|U|137
9IOT|1|A|U|138
9IOT|1|A|U|139
9IOT|1|A|C|140
9IOT|1|A|G|141
9IOT|1|A|A|142

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

Large ribosomal subunit protein uL23