HL_9IOT_011

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9IOT|1|A|G|329, 9IOT|1|A|A|330, 9IOT|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_011 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.0779

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9IOT|1|A|G|327
9IOT|1|A|U|328
9IOT|1|A|G|329
9IOT|1|A|A|330
9IOT|1|A|C|331
9IOT|1|A|A|332
9IOT|1|A|G|333
9IOT|1|A|C|334
9IOT|1|A|C|335

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain W

Large ribosomal subunit protein uL24