HL_9IOT_025

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_025 not in the Motif Atlas

Homologous match to HL_8B0X_056

Geometric discrepancy: 0.4132

The information below is about HL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9IOT|1|A|C|885
9IOT|1|A|A|886
9IOT|1|A|U|887
9IOT|1|A|C|888
9IOT|1|A|C|889
9IOT|1|A|C|890
9IOT|1|A|G|891

Current chains

Chain A

23S rRNA

Nearby chains

Chain m

Small ribosomal subunit protein uS13