HL_9IOT_026

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

9IOT|1|A|U|958, 9IOT|1|A|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_026 not in the Motif Atlas

Geometric match to HL_4WF9_027

Geometric discrepancy: 0.1111

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9IOT|1|A|PSU|955
9IOT|1|A|G|956
9IOT|1|A|C|957
9IOT|1|A|U|958
9IOT|1|A|A|959
9IOT|1|A|A|960
9IOT|1|A|C|961
9IOT|1|A|G|962

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain O

Large ribosomal subunit protein uL16