HL_9IOT_051
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUAAAGAGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 9IOT|1|A|A|2268, 9IOT|1|A|C|2275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9IOT_051 not in the Motif Atlas
- Geometric match to HL_5J7L_187
- Geometric discrepancy: 0.0545
- The information below is about HL_5J7L_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91939.2
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9IOT|1|A|C|2264
9IOT|1|A|U|2265
9IOT|1|A|A|2266
9IOT|1|A|A|2267
9IOT|1|A|A|2268
9IOT|1|A|G|2269
9IOT|1|A|A|2270
9IOT|1|A|G|2271
9IOT|1|A|U|2272
9IOT|1|A|A|2273
9IOT|1|A|A|2274
9IOT|1|A|C|2275
9IOT|1|A|G|2276
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain O
- Large ribosomal subunit protein uL16
- Chain Y
- Large ribosomal subunit protein bL27
Coloring options: