HL_9IOT_063

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9IOT|1|A|G|2751, 9IOT|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_063 not in the Motif Atlas

Geometric match to HL_5J7L_199

Geometric discrepancy: 0.0802

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9IOT|1|A|C|2745
9IOT|1|A|U|2746
9IOT|1|A|G|2747
9IOT|1|A|A|2748
9IOT|1|A|A|2749
9IOT|1|A|A|2750
9IOT|1|A|G|2751
9IOT|1|A|C|2752
9IOT|1|A|A|2753
9IOT|1|A|U|2754
9IOT|1|A|C|2755
9IOT|1|A|U|2756
9IOT|1|A|A|2757
9IOT|1|A|A|2758
9IOT|1|A|G|2759

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L36

Chain H

Large ribosomal subunit protein uL6

Chain L

50S ribosomal protein L13