HL_9IOT_077

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_077 not in the Motif Atlas

Geometric match to HL_5J7L_008

Geometric discrepancy: 0.0848

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9IOT|1|a|A|320
9IOT|1|a|A|321
9IOT|1|a|C|322
9IOT|1|a|U|323
9IOT|1|a|G|324
9IOT|1|a|A|325
9IOT|1|a|G|326
9IOT|1|a|A|327
9IOT|1|a|C|328
9IOT|1|a|A|329
9IOT|1|a|C|330
9IOT|1|a|G|331
9IOT|1|a|G|332
9IOT|1|a|U|333

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16

Chain t

Small ribosomal subunit protein bS20