HL_9IOT_087

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_087 not in the Motif Atlas

Geometric match to HL_5J7L_019

Geometric discrepancy: 0.0522

The information below is about HL_5J7L_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9IOT|1|a|C|862
9IOT|1|a|U|863
9IOT|1|a|A|864
9IOT|1|a|A|865
9IOT|1|a|C|866
9IOT|1|a|G|867

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

Small ribosomal subunit protein uS5