HL_9IOT_098

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9IOT|1|a|U|1451, 9IOT|1|a|C|1452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_098 not in the Motif Atlas

Geometric match to HL_5HR7_005

Geometric discrepancy: 0.2072

The information below is about HL_5HR7_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.4

Basepair signature

cWW-F-F

Number of instances in this motif group

5

Unit IDs

9IOT|1|a|C|1449
9IOT|1|a|U|1450
9IOT|1|a|U|1451
9IOT|1|a|C|1452
9IOT|1|a|G|1453
9IOT|1|a|G|1454

Current chains

Chain a

16S rRNA

Nearby chains