HL_9IWF_002

3D structure

PDB id

9IWF (explore in PDB, NAKB, or RNA 3D Hub)

Description

crystal structure of P. beijingensis xanthine-II riboswitch in complex with xanthine

Experimental method

X-RAY DIFFRACTION

Resolution

2.06 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

9IWF|1|A|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IWF_002 not in the Motif Atlas

Geometric match to HL_4FEN_002

Geometric discrepancy: 0.1218

The information below is about HL_4FEN_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_46333.1

Basepair signature

cWW-R-cSH

Number of instances in this motif group

11

Unit IDs

9IWF|1|A|G|32
9IWF|1|A|U|33
9IWF|1|A|U|34
9IWF|1|A|U|35
9IWF|1|A|C|36
9IWF|1|A|G|37
9IWF|1|A|A|38
9IWF|1|A|C|39

Current chains

Chain A

P. beijingensis xanthine-II riboswitch (70-MER)

Nearby chains