HL_9J1M_013

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

9J1M|1|A|G|412, 9J1M|1|A|A|413, 9J1M|1|A|G|414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_013 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.1058

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9J1M|1|A|G|410
9J1M|1|A|U|411
9J1M|1|A|G|412
9J1M|1|A|A|413
9J1M|1|A|G|414
9J1M|1|A|A|415
9J1M|1|A|G|416
9J1M|1|A|C|417
9J1M|1|A|C|418

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24