HL_9J1M_018
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- UUUUGAAGAA
- Length
- 10 nucleotides
- Bulged bases
- 9J1M|1|A|A|676
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9J1M_018 not in the Motif Atlas
- Geometric match to HL_9DFE_016
- Geometric discrepancy: 0.1198
- The information below is about HL_9DFE_016
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
9J1M|1|A|U|668
9J1M|1|A|U|669
9J1M|1|A|U|670
9J1M|1|A|U|671
9J1M|1|A|G|672
9J1M|1|A|A|673
9J1M|1|A|A|674
9J1M|1|A|G|675
9J1M|1|A|A|676
9J1M|1|A|A|677
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32
- Chain 7
- 30S ribosomal protein THX
- Chain D
- Large ribosomal subunit protein uL3
- Chain L
- Large ribosomal subunit protein uL15
- Chain Q
- Large ribosomal subunit protein bL20
- Chain R
- Large ribosomal subunit protein bL21
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