HL_9J1M_036

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

9J1M|1|A|U|1527, 9J1M|1|A|U|1528

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_036 not in the Motif Atlas

Geometric match to HL_9DFE_034

Geometric discrepancy: 0.1061

The information below is about HL_9DFE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9J1M|1|A|G|1520
9J1M|1|A|U|1521
9J1M|1|A|U|1522
9J1M|1|A|G|1523
9J1M|1|A|A|1524
9J1M|1|A|U|1525
9J1M|1|A|A|1526
9J1M|1|A|U|1527
9J1M|1|A|U|1528
9J1M|1|A|C|1529

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein uL23