HL_9J1M_046

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UUUACUAAAAA

Length

11 nucleotides

Bulged bases

9J1M|1|A|A|2014, 9J1M|1|A|C|2015, 9J1M|1|A|U|2016, 9J1M|1|A|A|2020

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_046 not in the Motif Atlas

Geometric match to HL_5J7L_178

Geometric discrepancy: 0.0565

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

9J1M|1|A|U|2011
9J1M|1|A|U|2012
9J1M|1|A|U|2013
9J1M|1|A|A|2014
9J1M|1|A|C|2015
9J1M|1|A|U|2016
9J1M|1|A|A|2017
9J1M|1|A|A|2018
9J1M|1|A|A|2019
9J1M|1|A|A|2020
9J1M|1|A|A|2021

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain C

Large ribosomal subunit protein uL2