HL_9J1M_049

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

9J1M|1|A|A|2151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_049 not in the Motif Atlas

Geometric match to HL_9DFE_046

Geometric discrepancy: 0.1302

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9J1M|1|A|G|2148
9J1M|1|A|U|2149
9J1M|1|A|A|2150
9J1M|1|A|A|2151
9J1M|1|A|C|2152
9J1M|1|A|U|2153
9J1M|1|A|A|2154
9J1M|1|A|U|2155
9J1M|1|A|A|2156
9J1M|1|A|A|2157
9J1M|1|A|C|2158

Current chains

Chain A

23S rRNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA