HL_9J1M_050

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9J1M|1|A|U|2193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_050 not in the Motif Atlas

Geometric match to HL_5J7L_182

Geometric discrepancy: 0.0832

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9J1M|1|A|G|2187
9J1M|1|A|G|2188
9J1M|1|A|U|2189
9J1M|1|A|A|2190
9J1M|1|A|A|2191
9J1M|1|A|G|2192
9J1M|1|A|U|2193
9J1M|1|A|U|2194
9J1M|1|A|C|2195

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL14

Chain a

Small subunit ribosomal RNA; SSU rRNA