HL_9J1M_054

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

9J1M|1|A|A|2506, 9J1M|1|A|C|2513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_054 not in the Motif Atlas

Geometric match to HL_9DFE_052

Geometric discrepancy: 0.0612

The information below is about HL_9DFE_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9J1M|1|A|C|2502
9J1M|1|A|U|2503
9J1M|1|A|A|2504
9J1M|1|A|A|2505
9J1M|1|A|A|2506
9J1M|1|A|A|2507
9J1M|1|A|U|2508
9J1M|1|A|G|2509
9J1M|1|A|U|2510
9J1M|1|A|A|2511
9J1M|1|A|A|2512
9J1M|1|A|C|2513
9J1M|1|A|G|2514

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

Large ribosomal subunit protein uL16

Chain W

Large ribosomal subunit protein bL27