HL_9J1M_066

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9J1M|1|A|G|2989, 9J1M|1|A|C|2993

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_066 not in the Motif Atlas

Geometric match to HL_5J7L_199

Geometric discrepancy: 0.0944

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9J1M|1|A|C|2983
9J1M|1|A|U|2984
9J1M|1|A|G|2985
9J1M|1|A|A|2986
9J1M|1|A|A|2987
9J1M|1|A|A|2988
9J1M|1|A|G|2989
9J1M|1|A|C|2990
9J1M|1|A|A|2991
9J1M|1|A|U|2992
9J1M|1|A|C|2993
9J1M|1|A|U|2994
9J1M|1|A|A|2995
9J1M|1|A|A|2996
9J1M|1|A|G|2997

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36

Chain G

Large ribosomal subunit protein uL6

Chain J

Large ribosomal subunit protein uL13