HL_9J1M_078
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- GGUGACGGC
- Length
- 9 nucleotides
- Bulged bases
- 9J1M|1|a|G|265
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9J1M_078 not in the Motif Atlas
- Geometric match to HL_5J7L_006
- Geometric discrepancy: 0.153
- The information below is about HL_5J7L_006
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_84299.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9J1M|1|a|G|258
9J1M|1|a|G|259
9J1M|1|a|U|260
9J1M|1|a|G|261
9J1M|1|a|A|262
9J1M|1|a|C|263
9J1M|1|a|G|264
9J1M|1|a|G|265
9J1M|1|a|C|266
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain q
- Small ribosomal subunit protein uS17
- Chain t
- Small ribosomal subunit protein bS20
Coloring options: