HL_9J1M_093
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- GAU(2MG)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 9J1M|1|a|G|964
- QA status
- Modified nucleotides: 2MG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9J1M_093 not in the Motif Atlas
- Geometric match to HL_5J7L_021
- Geometric discrepancy: 0.1293
- The information below is about HL_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9J1M|1|a|G|956
9J1M|1|a|A|957
9J1M|1|a|U|958
9J1M|1|a|2MG|959
9J1M|1|a|5MC|960
9J1M|1|a|A|961
9J1M|1|a|A|962
9J1M|1|a|C|963
9J1M|1|a|G|964
9J1M|1|a|C|965
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain i
- Small ribosomal subunit protein uS9
- Chain j
- Small ribosomal subunit protein uS10
- Chain m
- Small ribosomal subunit protein uS13
Coloring options: