HL_9J1M_096

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9J1M|1|a|G|1085

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_096 not in the Motif Atlas

Geometric match to HL_8C3A_220

Geometric discrepancy: 0.1179

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9J1M|1|a|G|1080
9J1M|1|a|U|1081
9J1M|1|a|U|1082
9J1M|1|a|A|1083
9J1M|1|a|A|1084
9J1M|1|a|G|1085
9J1M|1|a|U|1086
9J1M|1|a|C|1087

Current chains

Chain a

16S rRNA

Nearby chains

Chain g

Small ribosomal subunit protein uS7