HL_9JL1_001

3D structure

PDB id

9JL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SpCas9 with mini-gRNA conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JL1_001 not in the Motif Atlas

Geometric match to HL_8GLP_035

Geometric discrepancy: 0.1881

The information below is about HL_8GLP_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9JL1|1|B|U|72
9JL1|1|B|G|73
9JL1|1|B|A|74
9JL1|1|B|A|75
9JL1|1|B|A|76
9JL1|1|B|A|77

Current chains

Chain B

gRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1