HL_9JMK_015

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

9JMK|1|A|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JMK_015 not in the Motif Atlas

Homologous match to HL_7A0S_016

Geometric discrepancy: 0.2813

The information below is about HL_7A0S_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9JMK|1|A|C|487
9JMK|1|A|G|488
9JMK|1|A|G|489
9JMK|1|A|C|490
9JMK|1|A|G|491
9JMK|1|A|A|492
9JMK|1|A|G|493

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22