Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9JMK_0011/A/59:68No text annotation
geometric
HL_8B0X_033
HL_35677.5
HL_9JMK_0021/A/86:96No text annotation
HL_9JMK_0031/A/123:128No text annotation
homologous
HL_7A0S_003
HL_82710.3
HL_9JMK_0041/A/136:143No text annotation
geometric
HL_2ZZM_002
HL_33487.1
HL_9JMK_0051/A/158:168No text annotation
geometric
HL_8B0X_037
HL_50765.2
HL_9JMK_0061/A/194:201No text annotation
homologous
HL_7A0S_006
HL_48677.1
HL_9JMK_0071/A/225:230No text annotation
homologous
HL_7A0S_007
HL_51020.2
HL_9JMK_0081/A/246:252No text annotation
homologous
HL_7A0S_008
HL_76371.2
HL_9JMK_0091/A/305:312T-loop with 1 bulged base
homologous
HL_7A0S_010
HL_13999.3
HL_9JMK_0101/A/319:323No text annotation
homologous
HL_7A0S_011
HL_75660.7
HL_9JMK_0111/A/327:335T-loop with unstacked turn
homologous
HL_7A0S_012
HL_27670.4
HL_9JMK_0121/A/381:393No text annotation
HL_9JMK_0131/A/410:417Pseudoknot geometry
homologous
HL_7A0S_014
HL_30680.5
HL_9JMK_0141/A/462:467GNRA
homologous
HL_7A0S_015
HL_34789.4
HL_9JMK_0151/A/487:493GNRA
homologous
HL_7A0S_016
HL_34789.4
HL_9JMK_0161/A/543:550No text annotation
HL_9JMK_0171/A/566:575T-loop with 2 stacked bulged bases
homologous
HL_7A0S_018
HL_33597.3
HL_9JMK_0181/A/611:617No text annotation
geometric
HL_9E6Q_019
HL_42293.1
HL_9JMK_0191/A/629:634GNRA
homologous
HL_7A0S_020
HL_34789.4
HL_9JMK_0201/A/641:647No text annotation
geometric
HL_9E6Q_022
HL_34789.4
HL_9JMK_0211/A/744:753No text annotation
homologous
HL_7A0S_022
HL_50204.1
HL_9JMK_0221/A/779:785UNCG variation
homologous
HL_7A0S_023
HL_51020.2
HL_9JMK_0231/A/826:831No text annotation
homologous
HL_7A0S_024
HL_27530.1
HL_9JMK_0241/A/955:962GNRA
homologous
HL_7A0S_026
HL_34789.4
HL_9JMK_0251/A/978:985No text annotation
homologous
HL_7A0S_027
HL_47171.1
HL_9JMK_0261/A/1222:1227GNRA
homologous
HL_7A0S_031
HL_34789.4
HL_9JMK_0271/A/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_7A0S_032
HL_33597.3
HL_9JMK_0281/A/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_7A0S_033
HL_49081.1
HL_9JMK_0291/A/1363:1368GNRA variation
homologous
HL_7A0S_034
HL_34789.4
HL_9JMK_0301/A/1389:1398No text annotation
homologous
HL_7A0S_035
HL_77449.1
HL_9JMK_0311/A/1451:1459No text annotation
geometric
HL_8B0X_064
HL_00557.1
HL_9JMK_0321/A/1565:1568Mini UNCG
homologous
HL_7A0S_039
HL_90436.3
HL_9JMK_0331/A/1612:1619No text annotation
homologous
HL_7A0S_040
HL_28592.2
HL_9JMK_0341/A/1630:1636GNRA
geometric
HL_7WKP_001
HL_34789.4
HL_9JMK_0351/A/1691:1696UNCG
homologous
HL_7A0S_042
HL_61337.3
HL_9JMK_0361/A/1752:1756No text annotation
homologous
HL_7A0S_044
HL_80709.5
HL_9JMK_0371/A/1777:1787No text annotation
HL_9JMK_0381/A/1806:1811GNRA
homologous
HL_7A0S_046
HL_93535.2
HL_9JMK_0391/A/2027:2036No text annotation
homologous
HL_7A0S_049
HL_78372.1
HL_9JMK_0401/A/2209:2215No text annotation
geometric
HL_8B0X_079
HL_42293.1
HL_9JMK_0411/A/2248:2256No text annotation
homologous
HL_7A0S_052
HL_11974.2
HL_9JMK_0421/A/2264:2276No text annotation
homologous
HL_7A0S_053
HL_02042.1
HL_9JMK_0441/A/2324:2331Pseudoknot geometry
homologous
HL_7A0S_055
HL_52651.2
HL_9JMK_0451/A/2355:2362GNRA with extra cWW
homologous
HL_7A0S_056
HL_87268.2
HL_9JMK_0461/A/2374:2379GNRA
homologous
HL_7A0S_057
HL_34789.4
HL_9JMK_0471/A/2404:2413No text annotation
homologous
HL_7A0S_058
HL_51853.2
HL_9JMK_0481/A/2471:2479No text annotation
homologous
HL_7A0S_059
HL_52011.1
HL_9JMK_0491/A/2528:2535GNRA variation
homologous
HL_7A0S_060
HL_46665.2
HL_9JMK_0501/A/2594:2599GNRA
homologous
HL_7A0S_062
HL_34789.4
HL_9JMK_0511/A/2658:2663GNRA
homologous
HL_7A0S_063
HL_34789.4
HL_9JMK_0521/A/2701:2706Ribsomal LSU H95
homologous
HL_7A0S_064
HL_12125.2
HL_9JMK_0531/A/2745:2759No text annotation
homologous
HL_7A0S_065
HL_53269.2
HL_9JMK_0541/A/2819:2827No text annotation
homologous
HL_7A0S_067
HL_37889.1
HL_9JMK_0551/A/2856:2861GNRA
homologous
HL_7A0S_068
HL_34789.4
HL_9JMK_0561/B/38:44No text annotation
homologous
HL_4V9F_071
HL_59381.2

Problematic loops

#loop idProblemSequence
HL_9JMK_043No text annotation
HL_9JMK_057No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9JMK_0011/A/24:30,
1/A/510:516
Triple sheared with non-canonical cWW
homologous
IL_7A0S_001
IL_22311.1
IL_9JMK_0021/A/36:37,
1/A/442:444
Single bulged A
homologous
IL_7A0S_002
IL_14190.2
IL_9JMK_0031/A/43:44,
1/A/434:436
Minor groove platform
homologous
IL_7A0S_003
IL_34520.3
IL_9JMK_0041/A/81:85,
1/A/97:105
Kink-turn
homologous
IL_7A0S_004
IL_94910.1
IL_9JMK_0051/A/183:184,
1/A/212:214
Single stack bend
homologous
IL_7A0S_005
IL_15011.3
IL_9JMK_0061/A/188:194,
1/A/201:208
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_006
IL_62167.3
IL_9JMK_0071/A/239:245,
1/A/253:258
No text annotation
geometric
IL_8B0X_071
IL_02666.1
IL_9JMK_0081/A/293:295,
1/A/343:347
No text annotation
geometric
IL_9E6Q_016
IL_76658.1
IL_9JMK_0091/A/481:484,
1/A/496:509
No text annotation
geometric
IL_8B0X_075
IL_44923.1
IL_9JMK_0101/A/536:539,
1/A/554:557
No text annotation
geometric
IL_8B0X_076
IL_58355.2
IL_9JMK_0111/A/564:566,
1/A/575:577
Isolated non-canonical cWW pair
homologous
IL_7A0S_011
IL_71625.3
IL_9JMK_0121/A/606:610,
1/A/618:622
AAA cross-strand stack
homologous
IL_7A0S_013
IL_66798.3
IL_9JMK_0131/A/672:674,
1/A/806:808
Isolated non-canonical cWW pair
homologous
IL_7A0S_014
IL_01003.4
IL_9JMK_0141/A/674:678,
1/A/799:806
tHW-tHW cross-strand stack
homologous
IL_7A0S_015
IL_73855.1
IL_9JMK_0151/A/697:698,
1/A/763:765
Single bulged A
homologous
IL_7A0S_016
IL_14190.2
IL_9JMK_0161/A/702:703,
1/A/728:730
Single bulged G
homologous
IL_7A0S_017
IL_28408.2
IL_9JMK_0171/A/703:707,
1/A/724:728
Triple sheared
geometric
IL_4WF9_024
IL_15190.2
IL_9JMK_0181/A/738:740,
1/A/757:758
No text annotation
geometric
IL_8B0X_084
IL_48076.8
IL_9JMK_0191/A/775:777,
1/A/787:791
No text annotation
geometric
IL_8B0X_085
IL_89509.1
IL_9JMK_0201/A/837:838,
1/A/940:942
Single stack bend
homologous
IL_7A0S_022
IL_15011.3
IL_9JMK_0211/A/844:847,
1/A/933:934
No text annotation
geometric
IL_8B0X_087
IL_79144.1
IL_9JMK_0221/A/844:851,
1/A/926:934
No text annotation
IL_9JMK_0231/A/847:851,
1/A/926:933
No text annotation
IL_9JMK_0241/A/856:862,
1/A/915:921
No text annotation
geometric
IL_8B0X_090
IL_94128.1
IL_9JMK_0251/A/862:863,
1/A/913:915
Minor groove platform
homologous
IL_7A0S_028
IL_34520.3
IL_9JMK_0261/A/864:868,
1/A/909:912
C-loop
homologous
IL_7A0S_029
IL_16301.1
IL_9JMK_0271/A/994:996,
1/A/1159:1160
Single bulged C
homologous
IL_7A0S_032
IL_05642.3
IL_9JMK_0281/A/998:1002,
1/A/1153:1157
UAA/GAN
homologous
IL_7A0S_033
IL_08938.1
IL_9JMK_0291/A/1004:1011,
1/A/1150:1151
SSU/LSU pseudoknot
homologous
IL_7A0S_034
IL_11411.1
IL_9JMK_0301/A/1011:1013,
1/A/1149:1150
Single bulged U
homologous
IL_7A0S_035
IL_97561.4
IL_9JMK_0311/A/1018:1030,
1/A/1124:1144
No text annotation
IL_9JMK_0321/A/1031:1034,
1/A/1121:1123
Isolated non-canonical cWW pair
homologous
IL_7A0S_038
IL_76400.1
IL_9JMK_0331/A/1038:1041,
1/A/1114:1117
No text annotation
geometric
IL_8B0X_103
IL_15225.2
IL_9JMK_0341/A/1196:1198,
1/A/1247:1250
Isolated cWS basepair
homologous
IL_7A0S_041
IL_42997.5
IL_9JMK_0351/A/1202:1206,
1/A/1240:1243
No text annotation
geometric
IL_9DFE_045
IL_68574.5
IL_9JMK_0361/A/1208:1215,
1/A/1234:1238
Kink-turn
homologous
IL_7A0S_043
IL_90775.2
IL_9JMK_0371/A/1262:1269,
1/A/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_045
IL_62167.3
IL_9JMK_0381/A/1310:1313,
1/A/1603:1604
Major groove platform; stack outside cWW
homologous
IL_7A0S_046
IL_74641.2
IL_9JMK_0391/A/1319:1323,
1/A/1331:1333
C-loop
homologous
IL_7A0S_047
IL_06671.1
IL_9JMK_0401/A/1351:1355,
1/A/1376:1380
UAA/GAN
homologous
IL_7A0S_048
IL_89021.4
IL_9JMK_0411/A/1355:1361,
1/A/1370:1376
No text annotation
IL_9JMK_0431/A/1417:1421,
1/A/1577:1581
UAA/GAN
homologous
IL_7A0S_051
IL_08938.1
IL_9JMK_0441/A/1432:1435,
1/A/1557:1561
No text annotation
geometric
IL_8B0X_115
IL_28284.1
IL_9JMK_0451/A/1437:1440,
1/A/1551:1555
tSH-tHW
homologous
IL_7A0S_053
IL_74317.1
IL_9JMK_0461/A/1450:1451,
1/A/1459:1461
No text annotation
geometric
IL_8B0X_117
IL_97561.4
IL_9JMK_0471/A/1651:1656,
1/A/2004:2006
No text annotation
homologous
IL_7A0S_059
IL_12566.5
IL_9JMK_0481/A/1663:1665,
1/A/1995:1997
Isolated tWW turn
homologous
IL_7A0S_060
IL_10432.1
IL_9JMK_0491/A/1686:1691,
1/A/1696:1702
tSH-tSH-tHH-tHS
homologous
IL_7A0S_063
IL_20700.1
IL_9JMK_0501/A/1770:1771,
1/A/1980:1982
Single bulged A
homologous
IL_7A0S_064
IL_14190.2
IL_9JMK_0511/A/1798:1804,
1/A/1813:1821
Kink-turn related
homologous
IL_7A0S_065
IL_17069.6
IL_9JMK_0521/A/2049:2052,
1/A/2617:2619
No text annotation
geometric
IL_6DME_003
IL_75527.2
IL_9JMK_0531/A/2054:2056,
1/A/2612:2615
No text annotation
geometric
IL_8B0X_140
IL_80025.1
IL_9JMK_0541/A/2067:2069,
1/A/2442:2443
Single bulged U
homologous
IL_7A0S_075
IL_97561.4
IL_9JMK_0551/A/2070:2071,
1/A/2438:2441
Minor groove platform
homologous
IL_7A0S_076
IL_34520.3
IL_9JMK_0561/A/2081:2083,
1/A/2236:2239
Isolated tHS basepair with bulges
homologous
IL_7A0S_077
IL_87316.2
IL_9JMK_0571/A/2085:2087,
1/A/2232:2234
Isolated non-canonical cWW pair
homologous
IL_7A0S_078
IL_71625.3
IL_9JMK_0581/A/2202:2204,
1/A/2220:2221
No text annotation
geometric
IL_8B0X_146
IL_97561.4
IL_9JMK_0591/A/2350:2353,
1/A/2364:2367
Double sheared
homologous
IL_7A0S_081
IL_58355.2
IL_9JMK_0601/A/2401:2403,
1/A/2414:2415
No text annotation
geometric
IL_9AXU_122
IL_97561.4
IL_9JMK_0611/A/2453:2454,
1/A/2498:2500
Single stack bend
homologous
IL_7A0S_083
IL_15011.3
IL_9JMK_0621/A/2454:2455,
1/A/2496:2498
Major groove platform
homologous
IL_7A0S_084
IL_48076.8
IL_9JMK_0641/A/2459:2461,
1/A/2489:2493
Major groove minor groove platform with extra cWW
homologous
IL_7A0S_086
IL_36931.2
IL_9JMK_0651/A/2466:2470,
1/A/2480:2484
Double sheared with non-canonical cWW
homologous
IL_7A0S_087
IL_87767.2
IL_9JMK_0661/A/2507:2508,
1/A/2580:2582
Major groove platform
homologous
IL_7A0S_088
IL_46637.2
IL_9JMK_0671/A/2510:2512,
1/A/2574:2578
Isolated non-canonical cWW with bulges
homologous
IL_7A0S_089
IL_68118.4
IL_9JMK_0681/A/2512:2513,
1/A/2571:2574
Multiple bulged bases
homologous
IL_7A0S_090
IL_44609.2
IL_9JMK_0691/A/2522:2523,
1/A/2540:2543
Major groove platform with intercalation
homologous
IL_7A0S_091
IL_94991.2
IL_9JMK_0701/A/2591:2592,
1/A/2601:2603
Single bulged A
geometric
IL_1NBS_005
IL_14190.2
IL_9JMK_0711/A/2636:2640,
1/A/2774:2782
tSH-tHS-tHW
homologous
IL_7A0S_093
IL_04638.4
IL_9JMK_0721/A/2676:2677,
1/A/2730:2732
No text annotation
geometric
IL_8GLP_119
IL_15011.3
IL_9JMK_0731/A/2680:2684,
1/A/2725:2727
C-loop
homologous
IL_7A0S_095
IL_63596.12
IL_9JMK_0741/A/2687:2691,
1/A/2718:2722
UAA/GAN related, with intercalation
homologous
IL_7A0S_096
IL_82016.1
IL_9JMK_0751/A/2695:2696,
1/A/2711:2714
Multiple bulged bases
homologous
IL_7A0S_097
IL_44609.2
IL_9JMK_0761/A/2737:2742,
1/A/2762:2767
UAA/GAN with extra cWW
homologous
IL_7A0S_098
IL_91079.1
IL_9JMK_0771/A/2838:2839,
1/A/2878:2880
Major groove intercalation
homologous
IL_7A0S_099
IL_28408.2
IL_9JMK_0781/A/2843:2846,
1/A/2870:2874
No text annotation
geometric
IL_8B0X_169
IL_60988.2
IL_9JMK_0791/A/2847:2852,
1/A/2865:2869
No text annotation
homologous
IL_7A0S_101
IL_48489.1
IL_9JMK_0801/B/17:18,
1/B/65:67
Major groove intercalation
homologous
IL_4V9F_101
IL_14190.2
IL_9JMK_0811/B/23:28,
1/B/56:60
No text annotation
geometric
IL_8B0X_172
IL_18472.5
IL_9JMK_0821/B/29:31,
1/B/51:55
No text annotation
geometric
IL_2OEU_001
IL_46387.3
IL_9JMK_0831/B/34:38,
1/B/44:48
No text annotation
homologous
IL_7A0S_113
IL_58103.12
IL_9JMK_0841/B/71:79,
1/B/97:105
Bacterial 5S Loop E
homologous
IL_7A0S_106
IL_71138.1

Problematic loops

#loop idProblemSequence
IL_9JMK_042No text annotation
IL_9JMK_063Major groove platform

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9JMK_0011/A/30:31,
1/A/474:481,
1/A/509:510
No text annotation
geometric
J3_8B0X_014
J3_68715.1
J3_9JMK_0021/A/30:31,
1/A/474:484,
1/A/496:510
No text annotation
homologous
J3_7A0S_015
J3_17917.1
J3_9JMK_0031/A/32:35,
1/A/445:461,
1/A/468:473
No text annotation
homologous
J3_7A0S_016
J3_07616.1
J3_9JMK_0041/A/56:57,
1/A/70:76,
1/A/110:114
No text annotation
homologous
J3_7A0S_002
J3_01004.1
J3_9JMK_0051/A/683:689,
1/A/773:775,
1/A/791:794
No text annotation
homologous
J3_7A0S_004
J3_46658.1
J3_9JMK_0061/A/698:700,
1/A/732:736,
1/A/760:763
No text annotation
homologous
J3_7A0S_005
J3_69816.1
J3_9JMK_0071/A/1298:1303,
1/A/1625:1627,
1/A/1639:1642
No text annotation
homologous
J3_7A0S_006
J3_32852.7
J3_9JMK_0081/A/1306:1309,
1/A/1605:1611,
1/A/1620:1622
No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_9JMK_0091/A/1344:1349,
1/A/1382:1385,
1/A/1402:1403
No text annotation
J3_9JMK_0101/A/1423:1429,
1/A/1564:1565,
1/A/1568:1575
No text annotation
J3_9JMK_0111/A/2091:2093,
1/A/2196:2200,
1/A/2223:2228
No text annotation
homologous
J3_7A0S_009
J3_17460.1
J3_9JMK_0121/A/2295:2299,
1/A/2317:2323,
1/A/2332:2337
No text annotation
J3_9JMK_0131/A/2517:2520,
1/A/2545:2547,
1/A/2561:2567
No text annotation
homologous
J3_7A0S_011
J3_32601.6
J3_9JMK_0141/A/2812:2815,
1/A/2831:2836,
1/A/2882:2888
No text annotation
J3_9JMK_0151/B/10:16,
1/B/68:70,
1/B/106:110
No text annotation
J4_9JMK_0011/A/268:269,
1/A/370:375,
1/A/399:406,
1/A/421:424
No text annotation
homologous
J4_7A0S_001
J4_94698.1
J4_9JMK_0021/A/297:301,
1/A/316:319,
1/A/323:325,
1/A/337:341
No text annotation
homologous
J4_7A0S_002
J4_16174.1
J4_9JMK_0031/A/601:604,
1/A/624:628,
1/A/635:638,
1/A/650:656
No text annotation
J4_9JMK_0041/A/1270:1276,
1/A/1294:1295,
1/A/1645:1648,
1/A/2009:2010
No text annotation
homologous
J4_7A0S_004
J4_64571.6
J4_9JMK_0051/A/1313:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1603
No text annotation
homologous
J4_7A0S_006
J4_48150.1
J4_9JMK_0061/A/1772:1776,
1/A/1788:1792,
1/A/1827:1830,
1/A/1975:1979
No text annotation
homologous
J4_7A0S_008
J4_61477.6
J4_9JMK_0071/A/2285:2289,
1/A/2343:2347,
1/A/2370:2372,
1/A/2381:2383
No text annotation
homologous
J4_7A0S_009
J4_98139.1
J4_9JMK_0081/A/2643:2646,
1/A/2674:2676,
1/A/2732:2735,
1/A/2769:2771
No text annotation
J5_9JMK_0011/A/47:54,
1/A/116:121,
1/A/130:131,
1/A/148:150,
1/A/176:178
No text annotation
J5_9JMK_0021/A/531:533,
1/A/560:564,
1/A/577:579,
1/A/1261:1262,
1/A/2017:2018
No text annotation
homologous
J5_7A0S_003
J5_43153.6
J5_9JMK_0031/A/584:589,
1/A/668:671,
1/A/809:812,
1/A/1195:1196,
1/A/1250:1256
No text annotation
homologous
J5_7A0S_004
J5_74302.6
J5_9JMK_0041/A/1666:1682,
1/A/1706:1707,
1/A/1751:1752,
1/A/1756:1764,
1/A/1988:1994
No text annotation
J5_9JMK_0051/A/2057:2064,
1/A/2446:2453,
1/A/2500:2506,
1/A/2583:2588,
1/A/2606:2611
No text annotation
J6_9JMK_0011/A/45:46,
1/A/179:183,
1/A/214:225,
1/A/230:235,
1/A/262:266,
1/A/426:433
No text annotation
J6_9JMK_0021/A/2074:2077,
1/A/2243:2246,
1/A/2258:2259,
1/A/2281:2284,
1/A/2384:2395,
1/A/2421:2435
No text annotation
J7_9JMK_0011/A/8:15,
1/A/525:531,
1/A/2018:2023,
1/A/2040:2043,
1/A/2625:2630,
1/A/2788:2789,
1/A/2894:2895
No text annotation
J7_9JMK_0021/A/817:822,
1/A/835:837,
1/A/942:946,
1/A/971:976,
1/A/987:991,
1/A/1163:1164,
1/A/1185:1190
No text annotation

Problematic loops

No problematic loops


Coloring options:
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