HL_9JMK_030

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9JMK|1|A|U|1394, 9JMK|1|A|U|1396, 9JMK|1|A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JMK_030 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.4148

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9JMK|1|A|G|1389
9JMK|1|A|U|1390
9JMK|1|A|U|1391
9JMK|1|A|A|1392
9JMK|1|A|A|1393
9JMK|1|A|U|1394
9JMK|1|A|A|1395
9JMK|1|A|U|1396
9JMK|1|A|U|1397
9JMK|1|A|C|1398

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23