HL_9JMK_039

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

9JMK|1|A|A|2030, 9JMK|1|A|A|2031, 9JMK|1|A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JMK_039 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.293

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

9JMK|1|A|G|2027
9JMK|1|A|U|2028
9JMK|1|A|G|2029
9JMK|1|A|A|2030
9JMK|1|A|A|2031
9JMK|1|A|G|2032
9JMK|1|A|A|2033
9JMK|1|A|U|2034
9JMK|1|A|G|2035
9JMK|1|A|C|2036

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3