HL_9JMK_041

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9JMK|1|A|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JMK_041 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1952

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9JMK|1|A|C|2248
9JMK|1|A|U|2249
9JMK|1|A|G|2250
9JMK|1|A|G|2251
9JMK|1|A|G|2252
9JMK|1|A|G|2253
9JMK|1|A|C|2254
9JMK|1|A|G|2255
9JMK|1|A|G|2256

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L27