HL_9JMK_057

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

9JMK|1|B|U|87, 9JMK|1|B|U|89

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JMK_057 not in the Motif Atlas

Geometric match to HL_8B0X_098

Geometric discrepancy: 0.1726

The information below is about HL_8B0X_098

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9JMK|1|B|G|86
9JMK|1|B|U|87
9JMK|1|B|C|88
9JMK|1|B|U|89
9JMK|1|B|C|90

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA