HL_9JNS_011

3D structure

PDB id

9JNS (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9JNS|1|A|G|411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JNS_011 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.5468

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9JNS|1|A|G|410
9JNS|1|A|G|411
9JNS|1|A|A|412
9JNS|1|A|C|413
9JNS|1|A|C|414
9JNS|1|A|A|415
9JNS|1|A|U|416
9JNS|1|A|C|417

Current chains

Chain A

23S ribosomal RNA

Nearby chains