HL_9JNS_033

3D structure

PDB id

9JNS (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9JNS|1|A|G|2751, 9JNS|1|A|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JNS_033 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.2849

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

9JNS|1|A|C|2745
9JNS|1|A|U|2746
9JNS|1|A|G|2747
9JNS|1|A|A|2748
9JNS|1|A|A|2749
9JNS|1|A|A|2750
9JNS|1|A|G|2751
9JNS|1|A|C|2752
9JNS|1|A|A|2753
9JNS|1|A|U|2754
9JNS|1|A|C|2755
9JNS|1|A|U|2756
9JNS|1|A|A|2757
9JNS|1|A|A|2758
9JNS|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains