HL_9JPM_013
3D structure
- PDB id
- 9JPM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9JPM_013 not in the Motif Atlas
- Homologous match to HL_6CZR_086
- Geometric discrepancy: 0.1227
- The information below is about HL_6CZR_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9JPM|1|A|C|689
9JPM|1|A|G|690
9JPM|1|A|G|691
9JPM|1|A|U|692
9JPM|1|A|G|693
9JPM|1|A|A|694
9JPM|1|A|A|695
9JPM|1|A|A|696
9JPM|1|A|U|697
9JPM|1|A|G|698
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain K
- 30S ribosomal protein S11
- Chain U
- 30S ribosomal protein S21
- Chain X
- mRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
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