HL_9JPM_030
3D structure
- PDB id
- 9JPM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- ACU(70U)UU(12A)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 70U, 12A, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9JPM_030 not in the Motif Atlas
- Homologous match to HL_7U2J_104
- Geometric discrepancy: 0.1429
- The information below is about HL_7U2J_104
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9JPM|1|V|A|31
9JPM|1|V|C|32
9JPM|1|V|U|33
9JPM|1|V|70U|34
9JPM|1|V|U|35
9JPM|1|V|U|36
9JPM|1|V|12A|37
9JPM|1|V|A|38
9JPM|1|V|PSU|39
Current chains
- Chain V
- A-site tRNA-Lys
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- 30S ribosomal protein S12
- Chain X
- mRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: