HL_9JPM_040

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9JPM|1|a|A|196, 9JPM|1|a|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPM_040 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.1003

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9JPM|1|a|G|194
9JPM|1|a|A|195
9JPM|1|a|A|196
9JPM|1|a|A|197
9JPM|1|a|C|198
9JPM|1|a|A|199
9JPM|1|a|U|200
9JPM|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15

Chain w

50S ribosomal protein L28