HL_9JPM_045

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9JPM|1|a|G|329, 9JPM|1|a|A|330, 9JPM|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPM_045 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3806

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9JPM|1|a|G|327
9JPM|1|a|U|328
9JPM|1|a|G|329
9JPM|1|a|A|330
9JPM|1|a|C|331
9JPM|1|a|A|332
9JPM|1|a|G|333
9JPM|1|a|C|334
9JPM|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24