HL_9JPM_080

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9JPM|1|a|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPM_080 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.1226

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9JPM|1|a|G|1949
9JPM|1|a|G|1950
9JPM|1|a|U|1951
9JPM|1|a|A|1952
9JPM|1|a|A|1953
9JPM|1|a|G|1954
9JPM|1|a|U|1955
9JPM|1|a|U|1956
9JPM|1|a|C|1957

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain j

50S ribosomal protein L14