HL_9JPM_097

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

9JPM|1|a|U|2797, 9JPM|1|a|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPM_097 not in the Motif Atlas

Geometric match to HL_8OI5_017

Geometric discrepancy: 0.319

The information below is about HL_8OI5_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9JPM|1|a|C|2795
9JPM|1|a|U|2796
9JPM|1|a|U|2797
9JPM|1|a|U|2798
9JPM|1|a|A|2799
9JPM|1|a|A|2800
9JPM|1|a|G|2801

Current chains

Chain a

23S rRNA

Nearby chains