Motif HL_44506.5 Version HL_44506.5 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9C75_001 | 9C75 | 0.6250 | 0 | R | Rev Response Element | C | 20 | A | 21 | A | 22 | U | 23 | G | 24 | cWW | ncHW |
| 2 | HL_9PN5_105 | 9PN5 | 0.6952 | 1 | B5 | SSU rRNA | C | 1359 | A | 1360 | U | 1361 | U | 1363 | G | 1364 | cWW | |
| 3 | HL_2Y9H_005 | 2Y9H | 0.3598 | 3 | J | RNA (19-mer) | A | 10 | C | 11 | G | 12 | G | 16 | U | 17 | cWW | ncWH |
| 4 | HL_9PN5_018 | 9PN5 | 0.1132 | 1 | A1 | LSU rRNA | G | 763 | U | 764 | U | 766 | U | 767 | C | 768 | cWW | cwW |
| 5 | HL_9SUM_019 | 9SUM | 0.0000 | 1 | A | LSU rRNA | G | 706 | U | 707 | C | 709 | U | 710 | C | 711 | cWW | cwW |
| 6 | HL_8OI5_017 | 8OI5 | 0.0935 | 1 | 1 | LSU rRNA | G | 759 | U | 760 | U | 762 | U | 763 | C | 764 | cWW | cwW |
| 7 | HL_9H3G_024 | 9H3G | 0.2378 | 1 | A | LSU rRNA | C | 772 | U | 773 | C | 775 | U | 776 | G | 777 | cWW | cwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAUG | 1 |
| CAUUUG | 1 |
| ACGCGUGU | 1 |
| GUCUUC | 1 |
| GUGCUC | 1 |
| GUGUUC | 1 |
| CUUCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAU | 1 |
| AUUU | 1 |
| CGCGUG | 1 |
| UCUU | 1 |
| UGCU | 1 |
| UGUU | 1 |
| UUCU | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-cWW-F
- Heat map statistics
- Min 0.09 | Avg 0.40 | Max 0.80
Coloring options: