HL_9JPO_075
3D structure
- PDB id
- 9JPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- UUUAUUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9JPO|1|a|A|1780, 9JPO|1|a|U|1781, 9JPO|1|a|U|1782, 9JPO|1|a|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9JPO_075 not in the Motif Atlas
- Geometric match to HL_9E6Q_045
- Geometric discrepancy: 0.08
- The information below is about HL_9E6Q_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 10
Unit IDs
9JPO|1|a|U|1777
9JPO|1|a|U|1778
9JPO|1|a|U|1779
9JPO|1|a|A|1780
9JPO|1|a|U|1781
9JPO|1|a|U|1782
9JPO|1|a|A|1783
9JPO|1|a|A|1784
9JPO|1|a|A|1785
9JPO|1|a|A|1786
9JPO|1|a|A|1787
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain c
- 50S ribosomal protein L2
Coloring options: