HL_9JPO_082
3D structure
- PDB id
- 9JPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- CUG(OMG)GGCGG
- Length
- 9 nucleotides
- Bulged bases
- 9JPO|1|a|G|2250
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9JPO_082 not in the Motif Atlas
- Homologous match to HL_7A0S_052
- Geometric discrepancy: 0.1086
- The information below is about HL_7A0S_052
- Detailed Annotation
- LSU P loop
- Broad Annotation
- LSU P loop
- Motif group
- HL_11974.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
9JPO|1|a|C|2248
9JPO|1|a|U|2249
9JPO|1|a|G|2250
9JPO|1|a|OMG|2251
9JPO|1|a|G|2252
9JPO|1|a|G|2253
9JPO|1|a|C|2254
9JPO|1|a|G|2255
9JPO|1|a|G|2256
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain Z
- Transfer RNA; tRNA
- Chain l
- 50S ribosomal protein L16
- Chain v
- 50S ribosomal protein L27
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