HL_9JPP_040

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9JPP|1|a|A|196, 9JPP|1|a|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPP_040 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.1007

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9JPP|1|a|G|194
9JPP|1|a|A|195
9JPP|1|a|A|196
9JPP|1|a|A|197
9JPP|1|a|C|198
9JPP|1|a|A|199
9JPP|1|a|U|200
9JPP|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15

Chain w

50S ribosomal protein L28