HL_9JPP_043

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9JPP|1|a|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPP_043 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.124

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9JPP|1|a|C|305
9JPP|1|a|U|306
9JPP|1|a|G|307
9JPP|1|a|G|308
9JPP|1|a|A|309
9JPP|1|a|A|310
9JPP|1|a|A|311
9JPP|1|a|G|312

Current chains

Chain a

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L24