HL_9JQ2_045

3D structure

PDB id

9JQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9JQ2|1|a|G|329, 9JQ2|1|a|A|330, 9JQ2|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JQ2_045 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3933

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9JQ2|1|a|G|327
9JQ2|1|a|U|328
9JQ2|1|a|G|329
9JQ2|1|a|A|330
9JQ2|1|a|C|331
9JQ2|1|a|A|332
9JQ2|1|a|G|333
9JQ2|1|a|C|334
9JQ2|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24