HL_9JQ2_047

3D structure

PDB id

9JQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9JQ2|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JQ2_047 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.0958

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9JQ2|1|a|G|410
9JQ2|1|a|G|411
9JQ2|1|a|A|412
9JQ2|1|a|C|413
9JQ2|1|a|C|414
9JQ2|1|a|A|415
9JQ2|1|a|U|416
9JQ2|1|a|C|417

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15