HL_9JQ2_059

3D structure

PDB id

9JQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JQ2_059 not in the Motif Atlas

Geometric match to HL_8B0X_056

Geometric discrepancy: 0.3289

The information below is about HL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9JQ2|1|a|C|885
9JQ2|1|a|A|886
9JQ2|1|a|U|887
9JQ2|1|a|C|888
9JQ2|1|a|C|889
9JQ2|1|a|C|890
9JQ2|1|a|G|891

Current chains

Chain a

23S rRNA

Nearby chains

Chain M

30S ribosomal protein S13